991 PROCN superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
991 chr_1 PROCN superfamily 338777 344895 - PROCN superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0453

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0187
 0.36

Most Highly Correlated Transcripts

19899

Bromodomain superfamily
0.9047

263297

Glyco_18
0.8977

36563

MYSc
0.8905

2958

PROCN
0.8905

4959

hypothetical protein
0.8894

263191

PLN03076
0.8883

5777

PRO8NT
0.882

4338

hypothetical protein
0.8811

5858

hypothetical protein
0.8809

22258

PUB
0.8786

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PROCN superfamily PROCN (NUC071) domain; The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8... - 417.21 2.54E-131 858 - 1166 superfamily 116688
PRO8NT superfamily PRO8NT (NUC069), PrP8 N-terminal domain; The PRO8NT domain is found at the N-terminus of pre-mRNA... - 281.129 9.01E-87 456 - 620 superfamily 149261
PRO8NT superfamily PRO8NT (NUC069), PrP8 N-terminal domain; The PRO8NT domain is found at the N-terminus of pre-mRNA... - 281.129 9.01E-87 456 - 620 superfamily 149261
MPN superfamily Mpr1p, Pad1p N-terminal (MPN) domains; MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains... - 194.383 4.99E-55 1607 - 1710 superfamily 265414
RRM_4 superfamily RNA recognition motif of the spliceosomal PrP8; The large RNA-protein complex of the spliceosome... - 128.13 5.22E-34 1330 - 1423 superfamily 192639
RRM_4 superfamily RNA recognition motif of the spliceosomal PrP8; The large RNA-protein complex of the spliceosome... - 128.13 5.22E-34 1330 - 1423 superfamily 192639
RNase_H_like superfamily Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of... - 93.9504 8.59E-21 1513 - 1559 superfamily 265450

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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