10943 (DXR1) PLN02696
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10943 chr_18 (DXR1) PLN02696 502461 504130 - PLN02696

Synonyms

NCBI ID Ensembl Genomes exon ID
7444785 Thaps10943.2, Thaps10943.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0014

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0239
 0.34

Most Highly Correlated Transcripts

bd718

(bd718) PRK10387
0.9516

bd1474

(bd1474) phytoene_desat
0.9415

6524

phytoene_desat
0.9384

23291

hypothetical protein
0.929

bd1318

(bd1318) atpF
0.9254

bd1378

(bd1378) atpI
0.9249

5077

PLN00015
0.9245

bd598

(bd598) atpG
0.9214

bd1290

(bd1290) atpH
0.9197

bd218

(bd218) Chloroa_b-bind superfamily
0.9166

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DXPR_C superfamily DXP reductoisomerase C-terminal domain; This is the C-terminal domain of the 1-deoxy-D-xylulose-5-... - 191.486 8.42E-59 346 - 468 superfamily 257629
DXPR_C superfamily DXP reductoisomerase C-terminal domain; This is the C-terminal domain of the 1-deoxy-D-xylulose-5-... - 191.486 8.42E-59 346 - 468 superfamily 257629
DXP_reductoisom superfamily 1-deoxy-D-xylulose 5-phosphate reductoisomerase; This is a family of 1-deoxy-D-xylulose 5-phosphate... - 181.161 9.25E-55 80 - 210 superfamily 251461
DXP_reductoisom superfamily 1-deoxy-D-xylulose 5-phosphate reductoisomerase; This is a family of 1-deoxy-D-xylulose 5-phosphate... - 181.161 9.25E-55 80 - 210 superfamily 251461
DXP_redisom_C superfamily 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; This domain is found to the C-terminus... - 156.874 3.04E-46 224 - 314 superfamily 254800
DXP_redisom_C superfamily 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; This domain is found to the C-terminus... - 156.874 3.04E-46 224 - 314 superfamily 254800
PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase - 775.892 0 36 - 482 multi-dom 215374

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9258 PHATRDRAFT_9258 179077 260575 68547 Cre12.g546050.t1.2 AT5G62790.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003824 GO:0008299 GO:0030604 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008299

isoprenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
GO Category: 
BP

GO:0030604

1-deoxy-D-xylulose-5-phosphate reductoisomerase activity

Details: 
Catalysis of the reaction: 2-C-methyl-D-erythritol 4-phosphate + NADP(+) = 1-deoxy-D-xylulose 5-phosphate + H(+) + NADPH.
GO Category: 
MF

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