16039 MutS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
16039 chr_10 MutS 353972 355120 - MutS

Synonyms

NCBI ID Ensembl Genomes exon ID
7445853 Thaps16039.2, Thaps16039.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0128

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0152
 0.38

Most Highly Correlated Transcripts

22549

hypothetical protein
0.8847

19435

PTZ00184
0.8761

21843

hypothetical protein
0.8755

1985

hypothetical protein
0.874

9677

hypothetical protein
0.8729

6207

hypothetical protein
0.8694

23258

hypothetical protein
0.8649

21092

hypothetical protein
0.8636

9650

hypothetical protein
0.8613

25565

hypothetical protein
0.8603

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 206.384 1.22E-64 82 - 289 superfamily 266551
MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] - 251.435 7.83E-76 2 - 332 multi-dom 223327

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_52173 PHATRDRAFT_52173 149505 183820 70448 Not available AT3G20475.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003684 GO:0005524 GO:0006298 -

GO:0003684

damaged DNA binding

Details: 
Interacting selectively and non-covalently with damaged DNA.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006298

mismatch repair

Details: 
A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO Category: 
BP

Add comment

Log in to post comments