261040 RsuA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261040 chr_1 RsuA 1946409 1947562 - RsuA

Synonyms

NCBI ID Ensembl Genomes exon ID
7443149 Thaps261040.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0249

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0016
 0.55

Most Highly Correlated Transcripts

12899

AAA
0.8873

957

WRN_exo
0.8783

260875

COG2220
0.8764

7794

UPF0054
0.8747

3790

(CTL1) Mito_carr
0.8705

31412

NAD_bind_amino_acid_DH superfamily
0.8704

3804

hypothetical protein
0.8703

bd168

(bd168) Peptidase_S9 superfamily
0.8696

4290

hypothetical protein
0.8694

20769

RPE65 superfamily
0.8671

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 120.702 1.40E-32 147 - 345 superfamily 260207
RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation,... - 162.412 4.22E-47 104 - 345 multi-dom 224108

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1111 PHATRDRAFT_bd1111 186405 293937 45387 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004730 -

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

Add comment

Log in to post comments