262412 Ptr
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262412 chr_5 Ptr 331194 334974 + Ptr

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0171

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0177
 0.33

Most Highly Correlated Transcripts

bd758

(bd758) NA
0.8775

263997

(APA1) Adaptin_N
0.8726

5212

(Tp_CCCH26) regulator [Rayko]
0.8665

4171

hypothetical protein
0.866

20977

COG0398
0.8654

21893

CysPc
0.8641

5659

hypothetical protein
0.864

1850

PKc_like superfamily
0.864

1650

hypothetical protein
0.863

23013

Trs65
0.8587

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_M16 superfamily Insulinase (Peptidase family M16); Insulinase (Peptidase family M16). - 117.797 4.32E-30 172 - 299 superfamily 250047
Peptidase_M16_C superfamily Peptidase M16 inactive domain; Peptidase M16 consists of two structurally related domains. One is... - 81.3682 2.75E-17 339 - 528 superfamily 253075
Peptidase_M16_C superfamily Peptidase M16 inactive domain; Peptidase M16 consists of two structurally related domains. One is... - 81.3682 2.75E-17 339 - 528 superfamily 253075
Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification,... - 570.47 0 141 - 1071 multi-dom 223956

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_18335 PHATRDRAFT_18335 146150 186282 471473 Not available AT2G41790.1 261837

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 GO:0004231 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0004231

NA

Details: 
NA
GO Category: 
NA

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