263924 MFS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263924 chr_12 MFS 812213 813976 + MFS

Synonyms

NCBI ID Ensembl Genomes exon ID
7443175 Thaps263924.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0010

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0159
 0.26

Most Highly Correlated Transcripts

269147

NAD_binding_8 superfamily
0.8707

9903

(Tp_bZIP24b) regulator [Rayko]
0.8666

31169

PRX_BCP
0.8557

4820

Bestrophin superfamily
0.8526

4819

Bestrophin superfamily
0.848

261608

PLN02585
0.8413

270222

0.8413

233

CdCA1
0.831

22208

COG0075
0.8264

10360

(Tp_bZIP24a) regulator [Rayko]
0.8264

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 115.489 2.66E-28 164 - 576 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 115.489 2.66E-28 164 - 576 superfamily 119392
MFS_1 Major Facilitator Superfamily; Major Facilitator Superfamily. - 102.883 4.02E-24 167 - 541 multi-dom 254360

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45584 PHATRDRAFT_45584 179802 297458 216941 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0016021 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

Add comment

Log in to post comments