233 CdCA1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
233	chr_2	CdCA1	110164	111100	-	CdCA1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442183	Thaps233.2, Thaps233.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0010

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0159	0.26	310 9800

Most Highly Correlated Transcripts

4820 Bestrophin superfamily 0.9471	4819 Bestrophin superfamily 0.9138	264181 hypothetical protein 0.9	9903 (Tp_bZIP24b) regulator [Rayko] 0.887	260953 COG2423 0.882	10360 (Tp_bZIP24a) regulator [Rayko] 0.8758
269147 NAD_binding_8 superfamily 0.865	2078 hypothetical protein 0.8644	261608 PLN02585 0.856	33000 FTHFS 0.8452

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CdCA1 superfamily		Cadmium carbonic anhydrase repeat; This domain is the cadmium carbonic anhydrase repeat unit of the...	-	246.945	7.77E-82	31 - 238	superfamily	256061
CdCA1 superfamily		Cadmium carbonic anhydrase repeat; This domain is the cadmium carbonic anhydrase repeat unit of the...	-	246.945	7.77E-82	31 - 238	superfamily	256061

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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