263931 Peptidase_C12 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263931 chr_12 Peptidase_C12 superfamily 859168 860132 - Peptidase_C12 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443181 Thaps263931.2, Thaps263931.1, Thaps263931.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0289

Most Highly Correlated Transcripts

4108

hypothetical protein
0.8771

2666

hypothetical protein
0.8587

21234

hypothetical protein
0.851

263610

COG3899
0.8353

1479

Alpha_kinase
0.8269

263019

PLN02818
0.8238

20971

hypothetical protein
0.8205

5487

NADB_Rossmann superfamily
0.8158

21387

Peptidase_M48 superfamily
0.8135

261357

NAD_binding_8 superfamily
0.8125

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_C12 superfamily Cysteine peptidase C12 contains ubiquitin carboxyl-terminal hydrolase (UCH) families L1, L3, L5 and... - 204.407 5.50E-65 40 - 266 superfamily 263579

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41928 PHATRDRAFT_41928 267167 306489 Not available Cre03.g194250.t1.2 AT4G17510.1 337880

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004221 GO:0005622 GO:0006511 -

GO:0004221

ubiquitin thiolesterase activity

Details: 
Catalysis of the reaction: ubiquitin C-terminal thioester + H2O = ubiquitin + a thiol.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

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