31515 PTZ00368
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31515 chr_1 PTZ00368 1178783 1179964 - PTZ00368

Synonyms

NCBI ID Ensembl Genomes exon ID
7451421 Thaps31515.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0410

Most Highly Correlated Transcripts

33851

IBR
0.8337

38469

WD40
0.8303

37571

BCDHK_Adom3
0.8276

31136

Pkinase_Tyr
0.8269

267979

HCO3_cotransp superfamily
0.8249

31822

WD40
0.823

263642

(CDA1) CE4_PuuE_SpCDA1
0.8205

12899

AAA
0.8185

13448

Sec1
0.8183

262088

CHD
0.8158

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... cl17169 72.7229 3.39E-16 120 - 191 specific 240668
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 72.7229 3.39E-16 120 - 191 superfamily 266524
PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional - 76.384 8.14E-17 234 - 367 multi-dom 173561
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 61.8866 5.40E-11 120 - 204 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_7430 PHATRDRAFT_7430 155023 12170 Not available Cre01.g013800.t1.1 Not available 251378

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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