33649 (PSB6) proteasome_beta_type_6
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33649 chr_4 (PSB6) proteasome_beta_type_6 1570348 1571080 - proteasome_beta_type_6

Synonyms

NCBI ID Ensembl Genomes exon ID
7443707 Thaps33649.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0098
 0.36

Most Highly Correlated Transcripts

11068

(PSA6) proteasome_alpha_type_6
0.9067

37118

FeThRed_B
0.9041

26706

(PSA7) proteasome_alpha_type_7
0.904

40483

(PSA4) Ntn_hydrolase superfamily
0.901

269624

TIM_phosphate_binding superfamily
0.8875

35136

NA
0.8852

26868

(PSA3) proteasome_alpha_type_3
0.8841

262525

(PSB5) proteasome_beta_type_5
0.8738

37861

(RPN3) Rpn3_C
0.8716

7964

(PSB4) proteasome_beta_type_2
0.8685

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the... cl00467 310.311 3.50E-107 43 - 225 specific 239731
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 310.311 3.50E-107 43 - 225 superfamily 260443

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51691 PHATRDRAFT_51691 273024 304613 432777 Cre06.g279000.t1.2 AT4G31300.3 350003

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004175 GO:0005839 GO:0006511 GO:0004298 GO:0004299 -

GO:0004175

endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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