33911 Steroid_dh superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33911 chr_4 Steroid_dh superfamily 1272062 1272956 - Steroid_dh superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448788 Thaps33911.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0071

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0149
 0.40

Most Highly Correlated Transcripts

bd668

(bd668) NA
0.9112

bd1378

(bd1378) atpI
0.8992

bd1023

(bd1023) atpD
0.8981

bd1318

(bd1318) atpF
0.8974

bd598

(bd598) atpG
0.8969

bd718

(bd718) PRK10387
0.8895

bd1290

(bd1290) atpH
0.8877

bd2028

(bd2028) NA
0.8742

bd218

(bd218) Chloroa_b-bind superfamily
0.8708

bd1863

(bd1863) NA
0.8654

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Steroid_dh superfamily 3-oxo-5-alpha-steroid 4-dehydrogenase; This family consists of 3-oxo-5-alpha-steroid 4-... - 85.1509 2.18E-20 178 - 297 superfamily 266713

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28009 PHATRDRAFT_28009 186602 299886 56015 Not available AT5G16010.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of unsaturated fatty acids map01040

GO Terms

GO:0016021 GO:0004812 GO:0005524 GO:0006418 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

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