34785 prfB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34785 chr_6 prfB 10320 11960 - prfB

Synonyms

NCBI ID Ensembl Genomes exon ID
7446383 Thaps34785.1, Thaps34785.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0426

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0005
 0.39

Most Highly Correlated Transcripts

13308

PLN02948
0.8368

267979

HCO3_cotransp superfamily
0.8028

16114

PLN02350
0.7686

11671

hypothetical protein
0.7677

12836

EEP superfamily
0.7617

40200

TRX_reduct
0.7519

20579

hypothetical protein
0.7482

42133

CHD
0.7446

12899

AAA
0.7405

35136

NA
0.7399

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RF-1 RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and a... cl17422 150.026 3.03E-43 356 - 463 specific 249886
RF-1 superfamily RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and a... - 150.026 3.03E-43 356 - 463 superfamily 266672
PCRF This domain is found in peptide chain release factors; This domain is found in peptide chain... cl17745 136.439 2.35E-38 208 - 318 specific 214923
PCRF superfamily PCRF domain; This domain is found in peptide chain release factors. - 136.439 2.35E-38 208 - 318 superfamily 266807
prfB peptide chain release factor 2; Validated - 442.015 3.75E-152 124 - 494 multi-dom 234799

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_21873 PHATRDRAFT_21873 178602 283076 73530 Cre01.g010864.t1.1 AT5G36170.1 501483

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003747 GO:0006415 -

GO:0003747

translation release factor activity

Details: 
Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.
GO Category: 
MF

GO:0006415

translational termination

Details: 
The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
GO Category: 
BP

Add comment

Log in to post comments