35107 UBCcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
35107	chr_6	UBCc	677401	678776	-	UBCc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443580	Thaps35107.2, Thaps35107.3, Thaps35107.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0444

Most Highly Correlated Transcripts

10873 NA 0.899	8067 Na_Ca_ex 0.8716	261357 NAD_binding_8 superfamily 0.8545	bd388 (bd388) COG3899 0.8475	33699 TRX_family 0.8428	37621 Ptr 0.8303
263978 (Tp_HSF_4.2b) HSF_DNA-bind 0.8204	261430 Aa_trans superfamily 0.82	13740 DUF221 superfamily 0.8196	264346 (Tp_HSF_3.7b) HSF_DNA-bind 0.8152

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UBCc		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	cl00154	143.112	2.12E-41	8 - 122	specific	238117
UBCc superfamily		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	-	143.112	2.12E-41	8 - 122	superfamily	260221

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_13114	PHATRDRAFT_13114	266990	66422	456752	Cre03.g202897.t1.1	AT3G17000.1	479615

KEGG

KEGG description	KEGG Pathway
Protein processing in endoplasmic reticulum	map04141

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

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