36787 HMGB-UBF_HMG-box
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36787 chr_12 HMGB-UBF_HMG-box 195105 195725 + HMGB-UBF_HMG-box

Synonyms

NCBI ID Ensembl Genomes exon ID
7443246 Thaps36787.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0320

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0065
 0.48

Most Highly Correlated Transcripts

bd722

(bd722) NA
0.8113

2443

hypothetical protein
0.7546

bd1071

(bd1071) NA
0.7507

269723

hypothetical protein
0.746

24195

HA
0.7333

25438

(Tp_fungal_TRF1b) regulator [Rayko]
0.7268

bd1983

(bd1983) RecA-like_NTPases superfamily
0.7254

39232

PP2Cc
0.7238

262599

HA
0.7234

264222

POLBc superfamily
0.7169

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 77.2829 8.76E-19 63 - 128 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 77.2829 8.76E-19 63 - 128 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12674 PHATRDRAFT_12674 Not available 260161 59608 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000785 GO:0003677 GO:0005634 GO:0006355 -

GO:0000785

chromatin

Details: 
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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