25438 (Tp_fungal_TRF1b) regulator [Rayko]
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25438 chr_18 (Tp_fungal_TRF1b) regulator [Rayko] 787012 790267 + regulator [Rayko]

Synonyms

NCBI ID Ensembl Genomes exon ID
7450908 Thaps25438.3, Thaps25438.2, Thaps25438.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0247

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0187
 0.36

Most Highly Correlated Transcripts

4960

Cyt-b5
0.8588

39741

(APM3) AP-3_Mu3_Cterm
0.8318

23602

hypothetical protein
0.8246

32366

Pumilio
0.8233

27557

3a01204
0.8219

16114

PLN02350
0.8218

6642

hypothetical protein
0.8109

9519

ANK
0.8101

11296

(Tp_fungal_TRF3) regulator [Rayko]
0.808

9449

hypothetical protein
0.8062

Conserved Domains

Not available

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50045 PHATRDRAFT_50045 214437 261510 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0008270 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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