37374 PseudoU_synth superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37374 chr_14 PseudoU_synth superfamily 900829 903133 - PseudoU_synth superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451590 Thaps37374.2, Thaps37374.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0224

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0195
 0.28

Most Highly Correlated Transcripts

34021

Methyltrn_RNA_3
0.9283

bd524

(bd524) NA
0.9237

38662

BING4CT
0.9186

268880

WD40 superfamily
0.9156

25473

SpoU_methylase
0.9106

21959

hypothetical protein
0.904

bd1807

(bd1807) RRS1 superfamily
0.9032

20629

YCII superfamily
0.9026

34176

AdoMet_MTases superfamily
0.9022

4517

hypothetical protein
0.902

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 245.046 3.29E-79 118 - 370 superfamily 260207

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11965 PHATRDRAFT_11965 163062 133847 44604 Cre16.g690250.t1.2 AT5G14460.1 309818

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004730 GO:0006396 GO:0008033 -

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0008033

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

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