38047 RCC1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38047 chr_18 RCC1 712221 714763 - RCC1

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0469

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0030
 0.47

Most Highly Correlated Transcripts

263124

RRM_snRNP70
0.8804

39955

ARM
0.8657

269726

Tryp_SPc
0.8399

6832

hypothetical protein
0.8309

29778

Beach
0.8271

263610

COG3899
0.8251

263599

COG3899
0.8213

42283

RabGAP-TBC
0.8107

12441

HP_HAP_like
0.7944

262487

HepA
0.7896

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 61.3887 6.45E-12 457 - 506 superfamily 249843
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 61.3887 6.45E-12 457 - 506 superfamily 249843
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 61.3887 6.45E-12 457 - 506 superfamily 249843
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 61.3887 6.45E-12 457 - 506 superfamily 249843
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 61.3887 6.45E-12 457 - 506 superfamily 249843
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 61.3887 6.45E-12 457 - 506 superfamily 249843
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 61.3887 6.45E-12 457 - 506 superfamily 249843
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 61.3887 6.45E-12 457 - 506 superfamily 249843

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_3182 PHATRDRAFT_3182 259247 264537 365890 Cre05.g230600.t1.1 AT5G63860.1 358246

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008766 GO:0016881 GO:0018169 -

GO:0008766

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity

Details: 
Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.
GO Category: 
MF

GO:0016881

acid-amino acid ligase activity

Details: 
Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0018169

ribosomal S6-glutamic acid ligase activity

Details: 
Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6.
GO Category: 
MF

Add comment

Log in to post comments