41733 (THI1) PLN02444Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
41733	chr_9	(THI1) PLN02444	817325	819658	+	PLN02444

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448098	Thaps41733.3, Thaps41733.2, Thaps41733.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0368

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0010	0.38	14000000 370

Most Highly Correlated Transcripts

16511 Nuc_sug_transp 0.8603	4108 hypothetical protein 0.8325	bd196 (bd196) Snf7 superfamily 0.7783	24274 hypothetical protein 0.7567	bd1935 (bd1935) NA 0.7337	10374 hypothetical protein 0.697
32481 HDc superfamily 0.6965	4082 hypothetical protein 0.6943	11211 Reprolysin_5 0.6933	11156 hypothetical protein 0.6886

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ThiC		ThiC family; ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine...	cl08031	809.374	0	163 - 586	specific	250998
ThiC superfamily		ThiC family; ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine...	-	809.374	0	163 - 586	superfamily	263521
ThiC-associated superfamily		ThiC-associated domain; This domain is most frequently found at the N-terminus of the ThiC family...	-	77.9165	2.32E-17	90 - 155	superfamily	257973
PLN02444		HMP-P synthase	-	1224.39	0	2 - 630	multi-dom	215243

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_38085	PHATRDRAFT_38085	229770	255053	Not available	Cre05.g240850.t1.2	AT2G29630.3	Not available

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

GO:0009228 -

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