7900 SCP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
7900 chr_9 SCP superfamily 214139 216125 + SCP superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443486 Thaps7900.3, Thaps7900.2, Thaps7900.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0097

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0282
 0.29

Most Highly Correlated Transcripts

5439

hypothetical protein
0.952

9432

SCP superfamily
0.9468

25838

hypothetical protein
0.9463

23757

hypothetical protein
0.9379

20891

Cyt_b561_FRRS1_like
0.9324

11138

hypothetical protein
0.9277

11499

hypothetical protein
0.9245

3424

hypothetical protein
0.9193

8273

hypothetical protein
0.9093

22062

hypothetical protein
0.9037

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 77.6354 8.64E-17 432 - 569 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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