8248 HopJ superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
8248	chr_10	HopJ superfamily	86082	87067	-	HopJ superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450798	Thaps8248.3, Thaps8248.1, Thaps8248.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0015

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0260	0.25	6.6 43

Most Highly Correlated Transcripts

261608 PLN02585 0.9483	5077 PLN00015 0.9474	575 PRK00062 0.9397	268474 PLN02657 0.9388	38306 Chloroa_b-bind 0.9375	31012 (Cpx1) PLN02873 0.9327
270340 hypothetical protein 0.9325	32201 Cob-chelat-sub 0.9307	bd672 (bd672) NA 0.9284	38924 PLN02627 0.9258

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HopJ superfamily		HopJ type III effector protein; Pathovars of Pseudomonas syringae interact with their plant hosts...	-	131.93	4.55E-39	88 - 193	superfamily	204088

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_31409	PHATRDRAFT_31409	259707	207552	460521	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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