22212 COG5638
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22212 chr_4 COG5638 866793 869765 + COG5638

Synonyms

NCBI ID Ensembl Genomes exon ID
7447913 Thaps22212.2, Thaps22212.3, Thaps22212.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0199
 0.24

Most Highly Correlated Transcripts

268689

RRM6_RBM19_RRM5_MRD1
0.9523

268559

COG1084
0.9494

22203

(Tp_CCHH28) zf-C2H2_2
0.9424

21082

Cupin_8 superfamily
0.9409

7265

PIN_SF superfamily
0.9381

2772

Utp14
0.9357

32374

TPR
0.935

24849

(Tp_CCCH8) DnaQ_like_exo superfamily
0.9274

23187

SDA1
0.9264

bd1667

(bd1667) Mpp10
0.9257

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
COG5638 Uncharacterized conserved protein [Function unknown] - 119.887 2.65E-28 247 - 837 multi-dom 227925

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49433 PHATRDRAFT_49433 241655 260974 Not available Cre10.g452500.t1.2 AT3G01160.1 335160

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004308 -

GO:0004308

exo-alpha-sialidase activity

Details: 
Catalysis of the hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates.
GO Category: 
MF

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