22916 DUF1162 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22916	chr_5	DUF1162 superfamily	2106650	2114986	+	DUF1162 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442292	Thaps22916.4, Thaps22916.3, Thaps22916.2, Thaps22916.5, Thaps22916.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0449

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0113	0.35	50 470

Most Highly Correlated Transcripts

4338 hypothetical protein 0.9551	12500 SNF2_N 0.9457	261495 Peptidase_M36 0.9384	22258 PUB 0.9383	20404 hypothetical protein 0.937	263934 HepA 0.9366
12602 MYSc 0.936	262607 WD40 superfamily 0.9345	268454 CAP_ED 0.9334	11869 hypothetical protein 0.9331

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF1162 superfamily		Protein of unknown function (DUF1162); This family represents a conserved region within several...	-	81.964	1.45E-16	1847 - 2173	superfamily	253843

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005509 -

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