24235 Peptidase_C19 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24235 chr_10 Peptidase_C19 superfamily 903273 910022 + Peptidase_C19 superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0475

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0158
 0.37

Most Highly Correlated Transcripts

22442

CHD
0.9273

20666

RabGAP-TBC
0.9201

21568

hypothetical protein
0.8999

269496

(Tp_TAZ3_PHD1) KAT11 superfamily
0.8903

12960

Vac14_Fig4_bd
0.889

24195

HA
0.885

16501

PKc_like superfamily
0.8847

5875

hypothetical protein
0.8836

21165

(Tp_TAF9) TAF9
0.8757

22244

hypothetical protein
0.8743

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_C19 superfamily Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove... - 78.4834 9.94E-16 1339 - 1547 superfamily 261337
DUSP DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the N-... cl12116 80.9361 1.50E-17 1062 - 1148 specific 253684
DUSP superfamily DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the N-... - 80.9361 1.50E-17 1062 - 1148 superfamily 264555
Peptidase_C19 superfamily Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove... - 78.4834 9.94E-16 1339 - 1547 superfamily 261337

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_21982 PHATRDRAFT_21982 269852 319795 Not available Not available AT1G32850.1 484843

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004197 GO:0004221 GO:0006511 GO:0006512 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004221

ubiquitin thiolesterase activity

Details: 
Catalysis of the reaction: ubiquitin C-terminal thioester + H2O = ubiquitin + a thiol.
GO Category: 
MF

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0006512

NA

Details: 
NA
GO Category: 
NA

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