260943 Tfb2 superfamily
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
260943 chr_1 Tfb2 superfamily 1450380 1452158 + Tfb2 superfamily
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0193
hypothetical protein
0.9336
PLN02321
0.8991
Leo1
0.8857
53EXOc
0.8741
YvcK_like
0.8727
hypothetical protein
0.8683
hypothetical protein
0.8672
NA
0.8668
ANK
0.8654
CbiO
0.8644
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Tfb2 superfamily Transcription factor Tfb2; Transcription factor Tfb2. - 233.323 5.24E-71 52 - 451 superfamily 262086
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 182101 328278 Not available Not available AT4G17020.2 479459
KEGG description KEGG Pathway
Nucleotide excision repair map03420
GO:0003700 GO:0005634 GO:0006281 GO:0006355 -

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP
Log in to post comments