260953 COG2423Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
260953	chr_1	COG2423	1525824	1526895	+	COG2423

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451513	Thaps260953.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0023

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0159	0.26	310 9800

Most Highly Correlated Transcripts

3353 FMN_dh 0.924	34585 PLN02389 0.9103	36208 (GDCT) PLN02319 0.8967	4370 hypothetical protein 0.8964	4819 Bestrophin superfamily 0.8884	4820 Bestrophin superfamily 0.8882
bd1820 (bd1820) Fasciclin 0.8847	261608 PLN02585 0.8838	28521 (GDCH) GCS_H 0.8832	233 CdCA1 0.882

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Shikimate_DH superfamily		Shikimate / quinate 5-dehydrogenase; This family contains both shikimate and quinate dehydrogenases...	-	175.628	1.94E-51	43 - 353	superfamily	267477
COG2423		Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]	-	205.233	9.78E-63	45 - 356	multi-dom	225280

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_54222	PHATRDRAFT_54222	187231	320234	453525	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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