26140 PRP8
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26140 chr_2 PRP8 2321427 2329301 + PRP8

Synonyms

NCBI ID Ensembl Genomes exon ID
7450457 Thaps26140.4, Thaps26140.2, Thaps26140.1, Thaps26140.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0261

Most Highly Correlated Transcripts

23979

zf-HC5HC2H superfamily
0.9291

40925

(RPB21) PRK08565
0.9166

24688

hypothetical protein
0.9161

11261

WD40 superfamily
0.911

22533

hypothetical protein
0.9097

21248

RRM
0.9085

25811

hypothetical protein
0.9069

25451

AAA superfamily
0.9064

5788

TFIIS_M
0.9063

269532

meiotic check point regulator-like protein
0.9049

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_H_like_Prp8_IV Ribonuclease-like Prp8 domain IV core; This family contains Prp8 domain IV, which adopts a RNase H... cl14782 566.59 0 1852 - 2102 specific 260013
RNase_H_like superfamily Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of... - 566.59 0 1852 - 2102 superfamily 265450
MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8;... cl13996 448.229 1.75E-143 2153 - 2413 specific 163687
MPN superfamily Mpr1p, Pad1p N-terminal (MPN) domains; MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains... - 448.229 1.75E-143 2153 - 2413 superfamily 265414
PROCN superfamily PROCN (NUC071) domain; The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8... - 756.571 0 467 - 877 superfamily 116688
PROCN superfamily PROCN (NUC071) domain; The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8... - 756.571 0 467 - 877 superfamily 116688
U6-snRNA_bdg superfamily U6-snRNA interacting domain of PrP8; This domain incorporates the interacting site for the U6-snRNA... - 343.299 5.71E-108 1527 - 1686 superfamily 256080
U6-snRNA_bdg superfamily U6-snRNA interacting domain of PrP8; This domain incorporates the interacting site for the U6-snRNA... - 343.299 5.71E-108 1527 - 1686 superfamily 256080
PRO8NT superfamily PRO8NT (NUC069), PrP8 N-terminal domain; The PRO8NT domain is found at the N-terminus of pre-mRNA... - 297.307 6.29E-92 146 - 310 superfamily 149261
PRO8NT superfamily PRO8NT (NUC069), PrP8 N-terminal domain; The PRO8NT domain is found at the N-terminus of pre-mRNA... - 297.307 6.29E-92 146 - 310 superfamily 149261

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

Not available -

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