261781 (MutS) MutS
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
261781 chr_3 (MutS) MutS 943938 948567 - MutS
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0087
Normalized Mean Residue
Thaps_bicluster_0176
0.34
DNA_pol_E_B
0.9375
(bd624) Glyco_transf_34 superfamily
0.9286
MCM
0.9169
hypothetical protein
0.9143
HepA
0.9121
Pkinase
0.9096
AE_Prim_S
0.9062
(bd529) SNF2_N
0.8974
CDC6
0.8852
(bd439) POLBc_alpha
0.884
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MutS_V MutS domain V; This domain is found in proteins of the MutS family (DNA mismatch repair proteins)... cl17201 317.203 4.02E-99 1042 - 1300 specific 249899
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 317.203 4.02E-99 1042 - 1300 superfamily 266551
MutS_III MutS domain III; This domain is found in proteins of the MutS family (DNA mismatch repair proteins... cl17822 133.708 7.38E-34 693 - 1035 specific 253074
MutS_III superfamily MutS domain III; This domain is found in proteins of the MutS family (DNA mismatch repair proteins... - 133.708 7.38E-34 693 - 1035 superfamily 266862
MutS_I superfamily MutS domain I; This domain is found in proteins of the MutS family (DNA mismatch repair proteins)... - 125.38 5.94E-33 362 - 476 superfamily 250754
MutS_I superfamily MutS domain I; This domain is found in proteins of the MutS family (DNA mismatch repair proteins)... - 125.38 5.94E-33 362 - 476 superfamily 250754
MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] - 538.023 1.36E-172 359 - 1300 multi-dom 223327
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_53969 PHATRDRAFT_53969 212924 190397 253618 Cre05.g235750.t1.2 AT4G02070.1 353490
KEGG description KEGG Pathway
Mismatch repair map03430
GO:0003684 GO:0005524 GO:0006298 GO:0006259 -

damaged DNA binding

Details: 
Interacting selectively and non-covalently with damaged DNA.
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

mismatch repair

Details: 
A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO Category: 
BP

DNA metabolic process

Details: 
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO Category: 
BP
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