263509 mutl
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263509 chr_9 mutl 354642 357805 + mutl

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0204

Most Highly Correlated Transcripts

12836

EEP superfamily
0.9392

22107

hypothetical protein
0.9021

21268

zf-CXXC
0.8988

25162

hypothetical protein
0.8906

4818

hypothetical protein
0.8885

5093

hypothetical protein
0.8869

3436

SLAC1
0.8853

24639

EH
0.8847

25342

hypothetical protein
0.8821

9650

hypothetical protein
0.8809

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TopoII_MutL_Trans superfamily MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-... - 157.011 9.92E-45 236 - 349 superfamily 261445
mutl DNA mismatch repair protein MutL; All proteins in this family for which the functions are known are... - 302.638 7.94E-96 12 - 341 multi-dom 233035

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54331 PHATRDRAFT_54331 136599 257081 315693 Cre01.g036050.t1.1 AT4G09140.1 501043

KEGG

KEGG description KEGG Pathway
Mismatch repair map03430

GO Terms

GO:0006298 GO:0005524 GO:0005634 -

GO:0006298

mismatch repair

Details: 
A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO Category: 
BP

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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