263766 SBF superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263766 chr_11a SBF superfamily 200340 201064 - SBF superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444541 Thaps263766.2, Thaps263766.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0294

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0012
 0.49

Most Highly Correlated Transcripts

bd846

(bd846) NA
0.8705

bd1081

(bd1081) NA
0.825

bd1173

(bd1173) S_TKc
0.8098

bd856

(bd856) NA
0.7957

bd1983

(bd1983) RecA-like_NTPases superfamily
0.7942

262580

AdoMet_dc
0.788

bd950

(bd950) NA
0.7865

38672

Rab
0.7842

22109

hypothetical protein
0.7726

36246

MPP_superfamily superfamily
0.7715

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SBF superfamily Sodium Bile acid symporter family; This family consists of Na+/bile acid co-transporters. These... - 74.6793 1.44E-16 10 - 156 superfamily 267570

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006814 GO:0008508 GO:0016020 -

GO:0006814

sodium ion transport

Details: 
The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0008508

bile acid:sodium symporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in).
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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