264387 MATE_like superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264387	chr_16a	MATE_like superfamily	383035	384935	+	MATE_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450021	Thaps264387.6, Thaps264387.3, Thaps264387.1, Thaps264387.4, Thaps264387.2, Thaps264387.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0059

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0239	0.34	160 920

Most Highly Correlated Transcripts

bd1342 (bd1342) psaL 0.9475	bd1403 (bd1403) NA 0.9475	bd1652 (bd1652) ABC_ATPase superfamily 0.9437	bd466 (bd466) cytochrome_b_C 0.9417	bd1304 (bd1304) Ycf4 0.9333	bd1306 (bd1306) NA 0.931
bd1387 (bd1387) psbE 0.9277	bd2088 (bd2088) rbcL 0.9261	bd467 (bd467) Cytochrome_b_N 0.9223	bd1037 (bd1037) Ycf66_N 0.922

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
MATE_like superfamily		Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins...	-	146.552	6.51E-39	84 - 508	superfamily	263758
NorM		Na+-driven multidrug efflux pump [Defense mechanisms]	-	95.7543	1.84E-21	84 - 509	multi-dom	223608

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_44222	PHATR_44222	266765	181272	112799	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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