268048 MFS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268048 chr_1 MFS 1710866 1712633 - MFS

Synonyms

NCBI ID Ensembl Genomes exon ID
7445156 Thaps268048.2, Thaps268048.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0069
 0.35

Most Highly Correlated Transcripts

bd1876

(bd1876) NatB_MDM20 superfamily
0.8851

268688

hypothetical protein
0.8847

15424

hypothetical protein
0.8839

23245

hypothetical protein
0.8815

1374

RRM
0.877

24834

hypothetical protein
0.8749

262699

YgdL_like
0.8735

22499

TrmA
0.8704

21462

(rpoT) rpot-like RNA polymerase
0.8694

20788

Diphthine_synthase
0.8688

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 65.0277 8.48E-12 105 - 461 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 65.0277 8.48E-12 105 - 461 superfamily 119392

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49971 PHATRDRAFT_49971 157741 320072 Not available Not available Not available 338788

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0016021 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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