28028 RPN6Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
28028	chr_4	RPN6	1874051	1875384	-	RPN6

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443767	Thaps28028.1, Thaps28028.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0193

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0098	0.36	0.0005 0.0017

Most Highly Correlated Transcripts

40962 (RPN8) PLN03246 0.9248	33725 (RPN11) MPN_RPN11_CSN5 0.9189	26239 (RPN1) RPN1 0.9166	34018 RPN7 0.9146	40483 (PSA4) Ntn_hydrolase superfamily 0.8979	4160 PMT_2 superfamily 0.8964
9880 SGNH_hydrolase superfamily 0.8912	261400 NA 0.8908	4353 O-FucT_like 0.8886	3354 hypothetical protein 0.8878

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PCI		PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).	cl02111	75.3456	2.91E-17	189 - 282	specific	250589
PCI superfamily		PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).	-	75.3456	2.91E-17	189 - 282	superfamily	261183
RPN6		26S proteasome regulatory complex component [Posttranslational modification, protein turnover,...	-	321.097	5.65E-107	2 - 314	multi-dom	227488

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_52198	PHATRDRAFT_52198	267924	263105	415549	Cre02.g097650.t1.2	AT1G29150.1	348875

KEGG

KEGG description	KEGG Pathway
Proteasome	map03050

GO Terms

GO:0004298 GO:0004299 -

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