26239 (RPN1) RPN1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
26239	chr_5	(RPN1) RPN1	472145	475340	+	RPN1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449697	Thaps26239.1, Thaps26239.4, Thaps26239.3, Thaps26239.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0193

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0098	0.36	0.0005 0.0017

Most Highly Correlated Transcripts

bd687 (bd687) NA 0.9349	28028 RPN6 0.9166	12836 EEP superfamily 0.897	33725 (RPN11) MPN_RPN11_CSN5 0.8872	12899 AAA 0.8867	1820 SET 0.8767
22676 hypothetical protein 0.8743	bd1949 (bd1949) NA 0.8741	25162 hypothetical protein 0.8693	14140 PDI_a_family 0.867

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RPN1		26S proteasome regulatory complex component [Posttranslational modification, protein turnover,...	-	749.066	0	37 - 897	multi-dom	227441

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_13622	PHATRDRAFT_13622	231541	201772	469845	Cre16.g676197.t1.1	AT4G28470.1	343670

KEGG

KEGG description	KEGG Pathway
Proteasome	map03050

GO Terms

GO:0000074 GO:0016512 -

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