28241 (gapC3) GapA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
28241 chr_5 (gapC3) GapA 491000 492374 + GapA

Synonyms

NCBI ID Ensembl Genomes exon ID
7451762 Thaps28241.2, Thaps28241.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0049

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0063
 0.47

Most Highly Correlated Transcripts

37539

cpn10
0.915

bd258

(bd258) HU
0.8848

5293

PRK00772
0.8681

33008

PLN02338
0.8659

bd1221

(bd1221) recQ_fam
0.857

38964

Chorismate_synthase
0.8511

bd1360

(bd1360) ycf24
0.831

bd1319

(bd1319) ycf16
0.8288

31851

BKR_SDR_c
0.8243

bd1828

(bd1828) NA
0.8052

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; GAPDH is a tetrameric NAD-binding... cl19935 271.734 4.07E-91 158 - 315 specific 251539
Gp_dh_C superfamily Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; GAPDH is a tetrameric NAD-binding... - 271.734 4.07E-91 158 - 315 superfamily 268288
Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; GAPDH is a tetrameric NAD-binding... cl17742 232.012 1.09E-75 3 - 153 specific 249536
Gp_dh_N superfamily Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; GAPDH is a tetrameric NAD-binding... - 232.012 1.09E-75 3 - 153 superfamily 266804
GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate... - 481.285 9.07E-171 3 - 334 multi-dom 223135

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25308 PHATRDRAFT_25308 275635 253151 Not available Cre12.g485150.t1.2 AT3G04120.1 285407

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004365 GO:0006096 GO:0051287 GO:0006006 GO:0008943 -

GO:0004365

glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity

Details: 
Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
GO Category: 
MF

GO:0006096

glycolysis

Details: 
The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.
GO Category: 
BP

GO:0051287

NAD binding

Details: 
Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO Category: 
MF

GO:0006006

glucose metabolic process

Details: 
The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
GO Category: 
BP

GO:0008943

NA

Details: 
NA
GO Category: 
NA

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