32098 PTZ00063
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32098 chr_2 PTZ00063 2597675 2599042 + PTZ00063

Synonyms

NCBI ID Ensembl Genomes exon ID
7452131 Thaps32098.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0458

Most Highly Correlated Transcripts

12836

EEP superfamily
0.8934

10270

hypothetical protein
0.8909

36438

SSB_OBF
0.8896

41687

(APB1) Adaptin_N
0.8788

13448

Sec1
0.8764

41025

HDAC_classI
0.8693

21131

Voltage_gated_ClC superfamily
0.8654

7945

hypothetical protein
0.8626

40868

EMP70 superfamily
0.8606

269663

(COP4) SEC21
0.8595

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Arginase_HDAC superfamily Arginase-like and histone-like hydrolases; Arginase-like/histone-like hydrolase superfamily... - 627.502 0 18 - 397 superfamily 266496
PTZ00063 histone deacetylase; Provisional - 621.445 0 14 - 453 multi-dom 240251

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49800 PHATRDRAFT_49800 223488 245235 Not available Cre16.g673150.t1.2 Not available 542338

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004407 GO:0005634 GO:0016575 GO:0047611 -

GO:0004407

histone deacetylase activity

Details: 
Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0016575

histone deacetylation

Details: 
The modification of histones by removal of acetyl groups.
GO Category: 
BP

GO:0047611

acetylspermidine deacetylase activity

Details: 
Catalysis of the reaction: N(8)-acetylspermidine + H(2)O = acetate + spermidine.
GO Category: 
MF

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