3280 COG0790Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3280	chr_3	COG0790	569797	571512	+	COG0790

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444698	Thaps3280.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0214

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0222	0.32	0.012 6000

Most Highly Correlated Transcripts

3071 NA 0.9387	4042 hypothetical protein 0.898	10869 Sm_like superfamily 0.8919	9425 TPR_12 0.8903	3649 hypothetical protein 0.8895	8303 Glyco_trans_1_2 0.8887
20846 LPLAT_MGAT-like 0.8859	4399 Methyltransf_22 superfamily 0.8841	269593 (RPT4) RPT1 0.8813	6552 hypothetical protein 0.8806

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG0790		FOG: TPR repeat, SEL1 subfamily [General function prediction only]	-	61.9839	8.19E-11	417 - 565	multi-dom	223861

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_43377	PHATRDRAFT_43377	271187	308816	Not available	Not available	Not available	311534

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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