34303 TEF1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34303 chr_5 TEF1 1539534 1541291 + TEF1

Synonyms

NCBI ID Ensembl Genomes exon ID
7448155 Thaps34303.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0132
 0.41

Most Highly Correlated Transcripts

12899

AAA
0.9045

20613

PLPDE_III_DapDC
0.9026

21654

hypothetical protein
0.8935

21933

RNA_pol_I_A49 superfamily
0.887

22031

Sin_N superfamily
0.8761

bd258

(bd258) HU
0.8672

5851

hypothetical protein
0.8669

262091

eukaryotic translation initiation factor 3, subunit 10
0.8659

263630

(MTS) tRNA_bind_EMAP-II_like
0.8621

37187

COG5354
0.8591

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EF1_alpha Elongation Factor 1-alpha (EF1-alpha) protein family; EF1 is responsible for the GTP-dependent... cl17170 375.291 3.73E-127 148 - 378 specific 206670
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 375.291 3.73E-127 148 - 378 superfamily 266525
eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation... cl02787 114.955 1.30E-30 386 - 467 specific 239756
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 114.955 1.30E-30 386 - 467 superfamily 261449
Translation_factor_III superfamily Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G... - 112.38 1.71E-29 474 - 579 superfamily 261448
TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] - 472.553 4.79E-162 140 - 581 multi-dom 227581

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
10972 PHATRDRAFT_34493 PHATRDRAFT_34493 214962 205003 428552 Cre06.g284750.t1.2 AT1G18070.2 356229

KEGG

KEGG description KEGG Pathway
mRNA surveillance pathway map03015

GO Terms

GO:0005525 GO:0006412 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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