35510 SET
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35510 chr_7 SET 792821 799297 - SET

Synonyms

NCBI ID Ensembl Genomes exon ID
7444087 Thaps35510.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0232

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0151
 0.31

Most Highly Correlated Transcripts

12982

AAA superfamily
0.9063

bd1945

(bd1945) NA
0.9048

18557

HrpA
0.8986

40402

SrmB
0.8926

31404

XRN1
0.887

264869

HELICc
0.8848

263947

SNF2_N
0.8836

2065

hypothetical protein
0.8798

7771

hypothetical protein
0.8792

14109

SrmB
0.8786

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on... cl02566 125.525 1.35E-32 454 - 573 specific 214614
SET superfamily SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be... - 125.525 1.35E-32 454 - 573 superfamily 261347
PKc_like superfamily Protein Kinases, catalytic domain; The protein kinase superfamily is mainly composed of the... - 111.098 4.30E-26 1722 - 2059 superfamily 263920
Pkinase Protein kinase domain; Protein kinase domain. - 79.2128 6.49E-16 1692 - 2060 multi-dom 249558

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
2597 PHATRDRAFT_16875 PHATRDRAFT_16875 192471 298517 425757 Cre07.g322450.t1.1 AT1G77300.1 565808

KEGG

KEGG description KEGG Pathway
Lysine degradation map00310

GO Terms

Not available -

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