36208 (GDCT) PLN02319
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36208 chr_9 (GDCT) PLN02319 375834 377204 + PLN02319

Synonyms

NCBI ID Ensembl Genomes exon ID
7443516 Thaps36208.1, Thaps36208.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0023

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0159
 0.26

Most Highly Correlated Transcripts

260953

COG2423
0.8967

34585

PLN02389
0.8952

3353

FMN_dh
0.8776

4820

Bestrophin superfamily
0.8719

39799

(GDCP) PLN02414
0.8597

28521

(GDCH) GCS_H
0.8584

22208

COG0075
0.8546

34030

(MAO1) PLN03129
0.8539

269942

SHMT
0.8536

269147

NAD_binding_8 superfamily
0.8408

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GCV_T Aminomethyltransferase folate-binding domain; This is a family of glycine cleavage T-proteins, part... cl01893 228.319 2.07E-72 86 - 299 specific 250713
GCV_T superfamily Aminomethyltransferase folate-binding domain; This is a family of glycine cleavage T-proteins, part... - 228.319 2.07E-72 86 - 299 superfamily 261109
GCV_T_C superfamily Glycine cleavage T-protein C-terminal barrel domain; This is a family of glycine cleavage T-... - 100.754 3.25E-26 311 - 406 superfamily 254962
GCV_T_C superfamily Glycine cleavage T-protein C-terminal barrel domain; This is a family of glycine cleavage T-... - 100.754 3.25E-26 311 - 406 superfamily 254962
PLN02319 aminomethyltransferase - 665.656 0 1 - 417 multi-dom 177953

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd521 PHATRDRAFT_bd521 199793 318089 422537 Cre03.g193750.t1.1 AT1G11860.3 559209

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004047 GO:0005737 GO:0006546 GO:0004374 -

GO:0004047

aminomethyltransferase activity

Details: 
Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006546

glycine catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid.
GO Category: 
BP

GO:0004374

NA

Details: 
NA
GO Category: 
NA

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