36524 Elf1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
36524	chr_10	Elf1	100758	101663	-	Elf1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446998	Thaps36524.2, Thaps36524.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0426

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0107	0.36	0.0011 0.0092

Most Highly Correlated Transcripts

261357 NAD_binding_8 superfamily 0.8028	263031 (Rad23) rad23 0.7983	586 PTZ00018 0.7908	10189 hypothetical protein 0.7833	263610 COG3899 0.7733	38207 SecE superfamily 0.7645
10322 hypothetical protein 0.7607	7902 cwf18 superfamily 0.7597	23095 UBCc 0.7565	3049 hypothetical protein 0.7506

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Elf1		Transcription elongation factor Elf1 like; This family of short proteins contains a putative zinc...	cl02038	98.5206	2.87E-27	6 - 78	specific	253027
Elf1 superfamily		Transcription elongation factor Elf1 like; This family of short proteins contains a putative zinc...	-	98.5206	2.87E-27	6 - 78	superfamily	261156

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_8181	PHATRDRAFT_8181	145345	156092	458656	Cre12.g544110.t1.1	AT5G46030.1	353974

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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