263031 (Rad23) rad23
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263031 chr_6 (Rad23) rad23 1934509 1936564 - rad23

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0429

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0107
 0.36

Most Highly Correlated Transcripts

36524

Elf1
0.7983

263610

COG3899
0.7961

22118

Pkinase
0.7944

32098

PTZ00063
0.7926

3021

TAF6
0.7906

9404

hypothetical protein
0.7905

36443

Peptidase_C14
0.7781

36438

SSB_OBF
0.7774

24464

hypothetical protein
0.777

38207

SecE superfamily
0.7766

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UBQ superfamily Ubiquitin-like proteins; Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins.... - 99.7112 3.16E-26 1 - 73 superfamily 260222
XPC-binding superfamily XPC-binding domain; Members of this family adopt a structure consisting of four alpha helices,... - 77.6562 2.18E-18 216 - 271 superfamily 192241
XPC-binding superfamily XPC-binding domain; Members of this family adopt a structure consisting of four alpha helices,... - 77.6562 2.18E-18 216 - 271 superfamily 192241
rad23 UV excision repair protein Rad23; All proteins in this family for which functions are known are... - 187.796 7.79E-56 1 - 335 multi-dom 233045

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43564 PHATRDRAFT_43564 208711 254556 60498 Cre08.g366400.t1.2 AT1G79650.1 553293

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0006464 GO:0005634 GO:0006289 -

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006289

nucleotide-excision repair

Details: 
A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
GO Category: 
BP

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