36917 TGT superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36917 chr_12 TGT superfamily 805628 807470 - TGT superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443174 Thaps36917.3, Thaps36917.2, Thaps36917.1, Thaps36917.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0227

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0091
 0.31

Most Highly Correlated Transcripts

20653

PseudoU_synth superfamily
0.8744

13308

PLN02948
0.8674

4372

hypothetical protein
0.8669

20930

DRE_TIM_metallolyase superfamily
0.856

20859

SIR2 superfamily
0.8534

1122

hypothetical protein
0.853

269034

hypothetical protein
0.8487

3292

COG2319
0.8456

22965

SrmB
0.8455

25473

SpoU_methylase
0.8417

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TGT superfamily Queuine tRNA-ribosyltransferase; This is a family of queuine tRNA-ribosyltransferases EC:2.4.2.29,... - 492.8 1.24E-171 138 - 530 superfamily 267577
Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis] - 389.314 3.34E-131 140 - 530 multi-dom 223420

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_24792 PHATRDRAFT_24792 Not available Not available 64581 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006400 GO:0008479 GO:0008616 -

GO:0006400

tRNA modification

Details: 
The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.
GO Category: 
BP

GO:0008479

queuine tRNA-ribosyltransferase activity

Details: 
Catalysis of the reaction: tRNA guanine + queuine = tRNA queuine + guanine.
GO Category: 
MF

GO:0008616

queuosine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.
GO Category: 
BP

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