3815 (Lhca6) Chloroa_b-bindThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3815	chr_3	(Lhca6) Chloroa_b-bind	1870427	1871300	-	Chloroa_b-bind

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452050	Thaps3815.2, Thaps3815.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0129	0.19	270 640

Most Highly Correlated Transcripts

bd218 (bd218) Chloroa_b-bind superfamily 0.9798	23808 hypothetical protein 0.9751	4882 (Lhcr4) fucoxanthin chl a/c light-harvesting protein 0.969	38122 Chloroa_b-bind superfamily 0.9687	33606 Chloroa_b-bind superfamily 0.9663	25402 (Lhcf10) fucoxanthin chl a/c light-harvesting protein, major type 0.9643
39813 Chloroa_b-bind superfamily 0.9598	4883 (Lhcr14) fucoxanthin chlorophyll a/c light-harvesting protein, lhcr type 0.9598	3327 hypothetical protein 0.9595	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9591

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Chloroa_b-bind		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	cl02879	104.311	4.07E-28	68 - 198	specific	249913
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	104.311	4.07E-28	68 - 198	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_22956	PHATRDRAFT_22956	210115	325841	Not available	Cre12.g508750.t1.2	AT1G45474.2	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

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