38216 AarFThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38216	chr_19a_19	AarF	84148	86135	+	AarF

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446258	Thaps38216.2, Thaps38216.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0043

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0132	0.41	2.4 2.2

Most Highly Correlated Transcripts

267979 HCO3_cotransp superfamily 0.8892	13308 PLN02948 0.8826	268443 SAICAR_synt_Sc 0.8779	10271 hypothetical protein 0.8725	36321 hypothetical protein 0.8677	40200 TRX_reduct 0.8662
37156 PLN02369 0.8654	22627 hypothetical protein 0.8637	37187 COG5354 0.8576	261047 Mito_carr 0.8531

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AarF		Predicted unusual protein kinase [General function prediction only]	cl17270	244.528	1.27E-72	178 - 619	specific	223733
APH_ChoK_like superfamily		Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK...	-	244.528	1.27E-72	178 - 619	superfamily	266599

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_9634	PHATRDRAFT_9634	206092	240503	64447	Cre10.g429800.t1.2	AT4G01660.1	501251

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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