38662 BING4CT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38662 chr_22 BING4CT 496587 498547 - BING4CT

Synonyms

NCBI ID Ensembl Genomes exon ID
7443887 Thaps38662.2, Thaps38662.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0141
 0.18

Most Highly Correlated Transcripts

34021

Methyltrn_RNA_3
0.9277

bd74

(bd74) T6A_YgjD
0.9223

37374

PseudoU_synth superfamily
0.9186

34596

WD40
0.9173

4372

hypothetical protein
0.9129

21959

hypothetical protein
0.9086

5540

hypothetical protein
0.9079

33670

RNRR2
0.9076

22965

SrmB
0.9074

8541

PRK00142
0.9069

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
BING4CT BING4CT (NUC141) domain; This C terminal domain is found in the BING4 family of nucleolar WD40... cl06957 145.799 6.46E-42 425 - 506 specific 254632
BING4CT superfamily BING4CT (NUC141) domain; This C terminal domain is found in the BING4 family of nucleolar WD40... - 145.799 6.46E-42 425 - 506 superfamily 263112
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 72.3676 2.79E-14 254 - 443 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 76.2807 6.54E-15 188 - 478 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15481 PHATRDRAFT_15481 149199 181060 100320 Cre12.g502800.t1.2 AT3G10530.1 538076

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004812 GO:0005524 GO:0006418 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

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