38768 SANT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38768 chr_22 SANT 494788 495636 + SANT

Synonyms

NCBI ID Ensembl Genomes exon ID
7443885 Thaps38768.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0133

Most Highly Correlated Transcripts

18434

PIPKc superfamily
0.8735

263599

COG3899
0.8548

17314

Solute_trans_a superfamily
0.8526

31075

PDEase_I
0.85

10588

hypothetical protein
0.8439

261279

(DGT) PLN03242
0.8359

263610

COG3899
0.8328

23261

(Tp_fungal_TRF1a) regulator [Rayko]
0.8316

14315

FAD_binding_7
0.8272

15328

Solute_trans_a
0.8243

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... cl17250 56.0446 8.33E-11 243 - 282 specific 238096
SANT superfamily 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... - 56.0446 8.33E-11 243 - 282 superfamily 266586

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 155015 152312 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005634 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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