39536 Zn-ribbon_RPB9
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39536 chr_2 Zn-ribbon_RPB9 1126900 1128396 + Zn-ribbon_RPB9

Synonyms

NCBI ID Ensembl Genomes exon ID
7450372 Thaps39536.2, Thaps39536.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0056

Most Highly Correlated Transcripts

23550

hypothetical protein
0.9144

263565

RNAP_I_III_AC19
0.913

42652

DRG
0.9108

21706

S1_Rrp4
0.9094

268443

SAICAR_synt_Sc
0.9092

8498

Ribosomal_L9_N
0.9059

36884

RimI
0.9013

24167

hypothetical protein
0.8941

21686

Prefoldin_2
0.893

40200

TRX_reduct
0.8904

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Zn-ribbon_RPB9 C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II; The C-terminal zinc ribbon... cl02609 82.6862 2.09E-21 115 - 163 specific 259793
Zn-ribbon superfamily C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit; The... - 82.6862 2.09E-21 115 - 163 superfamily 261369
RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription] - 76.3407 2.53E-18 53 - 163 multi-dom 224510

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_24922 PHATRDRAFT_24922 204458 200415 73569 Cre12.g505750.t1.2 AT3G16980.1 Not available

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003700 GO:0006354 GO:0006355 GO:0003899 GO:0006350 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0006354

DNA-templated transcription, elongation

Details: 
The extension of an RNA molecule after transcription initiation and promoter clearance at a DNA-dependent RNA polymerase promoter by the addition of ribonucleotides catalyzed by an RNA polymerase.
GO Category: 
BP

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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