39812 SunThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
39812	chr_3	Sun	481138	483612	+	Sun

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441775	Thaps39812.2, Thaps39812.1, Thaps39812.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0234	0.27	5.4 1.5

Most Highly Correlated Transcripts

4108 hypothetical protein 0.988	bd1876 (bd1876) NatB_MDM20 superfamily 0.9613	bd190 (bd190) SrmB 0.9043	34533 AAA_11 0.9	bd96 (bd96) eIF-3_zeta 0.8932	21462 (rpoT) rpot-like RNA polymerase 0.887
261777 MIF4G 0.8859	268451 SrmB 0.8785	36609 PRK00142 0.8749	18557 HrpA 0.8749

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sun		tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	-	211.48	1.19E-61	113 - 402	multi-dom	223222

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_3334	PHATRDRAFT_3334	189551	253358	464387	Cre03.g179860.t1.1	AT4G40000.1	447412

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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