4334 PseudoU_synth_RluCD_like
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
4334 chr_4 PseudoU_synth_RluCD_like 776809 778566 + PseudoU_synth_RluCD_like
NCBI ID Ensembl Genomes exon ID
7447514 Thaps4334.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0034
Normalized Mean Residue
Thaps_bicluster_0010
0.38
(bd1941) NA
0.9091
hypothetical protein
0.8862
hypothetical protein
0.8772
hypothetical protein
0.8665
hypothetical protein
0.864
(bd1839) NA
0.8632
(bd410) HNHc
0.8625
DnaJ
0.861
(Tp_HSF_3.2i) HSF_DNA-bind
0.8583
PRK02237
0.856
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 73.1405 5.37E-15 463 - 548 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 65.8217 1.28E-12 90 - 228 superfamily 260207
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 65.8217 1.28E-12 90 - 228 superfamily 260207
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47695 PHATRDRAFT_47695 259035 294425 Not available Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0003723 GO:0006396 GO:0009982 GO:0016439 -

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

NA

Details: 
NA
GO Category: 
NA
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