5954 PRK05476Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5954	chr_6	PRK05476	343276	344995	-	PRK05476

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448409	Thaps5954.2, Thaps5954.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0209

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0238	0.33	11 380000

Most Highly Correlated Transcripts

28496 (AHC3) PRK05476 0.9745	bd672 (bd672) NA 0.8904	644 (AK2) PTZ00247 0.8779	bd1766 (bd1766) NA 0.8778	ThpsCp056 (psbZ) photosystem II protein Z 0.8497	10143 hypothetical protein 0.849
bd624 (bd624) Glyco_transf_34 superfamily 0.8328	262279 PT_UbiA_chlorophyll 0.8308	ThpsCp019 (psbT) photosystem II protein T 0.8275	bd218 (bd218) Chloroa_b-bind superfamily 0.8273

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SAHH		S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains; S-adenosyl-L-homocysteine...	cl17240	738.499	0	15 - 468	specific	240619
FDH_GDH_like superfamily		Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related...	-	738.499	0	15 - 468	superfamily	266580
PRK05476		S-adenosyl-L-homocysteine hydrolase; Provisional	-	752.726	0	1 - 475	multi-dom	235488

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
263118		Not available	204625	157800	222339	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

GO:0004013 GO:0006730 -

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